PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 274aa    MW: 31119 Da    PI: 6.364
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010346genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.8e-2846106259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgy+WrKYGqK++  +++prsYYrCt++   +C+++k+v+rs++dp+v++itY+g+Hn++
  PGSC0003DMP400010346  46 DDGYSWRKYGQKDILRAKYPRSYYRCTYRhmqNCWATKQVQRSDDDPTVFDITYRGSHNCH 106
                           8**************************99899***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2738107IPR003657WRKY domain
SuperFamilySSF1182909.81E-2544107IPR003657WRKY domain
SMARTSM007748.9E-3845107IPR003657WRKY domain
PfamPF031064.1E-2646106IPR003657WRKY domain
PROSITE profilePS5081120.9246104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKRRVSAADF HWSTNLFLDG YCRKSQPTWT EQVKVSAESG FEGPTDDGYS WRKYGQKDIL  60
RAKYPRSYYR CTYRHMQNCW ATKQVQRSDD DPTVFDITYR GSHNCHHATY CAPQPTSPEK  120
QEFKNQAVYP TGQQYSNQVL MNLRANLRVN TNDLDKNDPA ACHFSFVPTF SSGMTDDNRH  180
FQISHVDDNL IGSGYSPSFV SPTTPESNYF SVSSSSQMNG YGMVHNLHHS ESDLTDIFSA  240
NTSTTSSPIV GDFSLDHLEL DPNFPFDNPN FFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352253.10.0PREDICTED: probable WRKY transcription factor 53
SwissprotQ9SUP69e-49WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLM1A5560.0M1A556_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149490.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-50WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]